MIles and Praneeth will be presenting the following papers:
Quantitative proteomics (iTRAQ or TMT labeling) Chen M, Zhang F, Chen B, Lau C, Xu K, Tong T, Huo C, Han Q, Su T, Kwan HY. Omics approach to reveal the effects of obesity on the protein profiles of the exosomes derived from different adipose depots. Cell Mol Life Sci. 2022 Oct 28;79(11):570. doi: 10.1007/s00018-022-04597-4. PMID: 36306016. Giambruno R, Mihailovich M, Bonaldi T.Mass Spectrometry-Based Proteomics to Unveil the Non-coding RNA World. Front Mol Biosci. 2018, Nov 8;5:90. doi: 10.3389/fmolb.2018.00090. eCollection 2018. Jürgen Cox and Matthias Mann, Quantitative, high-resolution proteomics for data-driven systems biology. Annu Rev Biochem. 2011;80:273-99. doi: 10.1146/annurev-biochem-061308-093216.
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Sam and Madeline will be presenting the following papers:
Choi S, Engelke R, Goswami N, Schmidt F. Proteomic profiling of metformin effects in 3T3-L1 adipocytes by SILAC-based quantification. Proteomics. 2022 Jun;22(11-12):e2100196. doi: 10.1002/pmic.202100196. Epub 2022 Mar 22. PMID: 35275438. Reviews: • Ong SE1, Mann M.A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc. 2006;1(6):2650-60. • Geiger T, Wisniewski JR, Cox J, Zanivan S, Kruger M, Ishihama Y, Mann M. Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nat Protoc. 2011 Feb;6(2):147-57. doi: 10.1038/nprot.2010.192. PMID: 21293456. Brooke and Maggie will be presenting the following papers:
Zhang Y, Shang L, Zhang J, Liu Y, Jin C, Zhao Y, Lei X, Wang W, Xiao X, Zhang X, Liu Y, Liu L, Zhuang MW, Mi Q, Tian C, Wang J, He F, Wang PH, Wang J. An antibody-based proximity labeling map reveals mechanisms of SARS-CoV-2 inhibition of antiviral immunity. Cell Chem Biol. 2022 Jan 20;29(1):5-18.e6. doi: 10.1016/j.chembiol.2021.10.008. Epub 2021 Oct 20. PMID: 34672954; PMCID: PMC8527578. Reviews: •Varnaitė R, MacNeill SA. Meet the neighbors: Mapping local protein interactomes by proximity-dependent labeling with BioID. Proteomics. 2016 Oct;16(19):2503-2518. doi: 10.1002/pmic.201600123. Epub 2016 Jul 27. PMID: 27329485; PMCID: PMC5053326. • The Proteome: Discovering the Structure and Function of Proteins: Jill Adams (2008). https://www.nature.com/scitable/topicpage/theproteome-discovering-the-structure-and-function-613/ |
AuthorDr. Ahna Skop Archives
April 2024
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